From Lab to Clinic: Building Robust Bioinformatics Workflows with Snakemake & Nextflow

  • June 25, 2025
  • Cyber INitiation
  • 1 min read
  • Introduction: Explain the challenge of reproducible NGS and single-cell pipelines.

  • Workflow Tools: Overview of Snakemake & Nextflow, emphasizing ease of integration with cloud/clinical settings.

  • Dr. Kwatra’s Pipeline: Share insights into his scalable workflows for multi-omics and clinical decision support.

  • Technical Highlights: Data staging, containerization, benchmarking, error handling.

  • Open Source & Collaboration: Encourage readers to explore his GitHub repositories, contribute, and adapt pipelines.

  • Conclusion: How these methods accelerate translational research and clinical trials.

Why it matters: Offers practical guidance for fellow bioinformaticians and developers, promoting Dr. Kwatra’s tools and labs.

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